2019----中国科学院分子植物科学卓越创新中心/中国科学院上海植物生理生态研究所

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Xu J^#, Cui K^#, Shen L, Shi J, Li L, You L, Fang C, Zhao G*, Feng Y*, Yang B*, Zhang Y*. (2019) Crl activates transcription by stabilizing active conformation of the master stress transcription initiation factor. Elife. 2019 Dec 17;8.

Liu HJ^#, Huang YC^#, Li XH^#, Wang HH, Ding YH, Kang CB, Sun MF, Li FY, Wang JC, Deng YT, Yang XR, Huang X, Gao XY, Yuan LL, An D, Wang WQ, Holding DR, Wu YR*. (2019) High frequency DNA rearrangement at qγ27 creates a novel allele for Quality Protein Maize breeding. Commun Biol. 2019 Dec 10;2:460.

He J^#, Zhang C, Dai H, Liu H, Zhang X, Yang J, Chen X, Zhu Y, Wang D, Qi X, Li W, Wang Z, An G, Yu N, He Z, Wang YF, Xiao Y, Zhang P, Wang E*. (2019) A LysM Receptor Heteromer Mediates Perception of Arbuscular Mycorrhizal Symbiotic Signal in Rice. Mol Plant. 2019 Dec 2;12(12):1561-1576.

Cui C^#, Wang JJ^#, Zhao JH^#, Fang YY, He XF, Guo HS*, Duan CG*. (2019) A Brassica miRNA Regulates Plant Growth and Immunity through Distinct Modes of Action. Mol Plant. 2019 Nov 30. doi: 10.1016/j.molp.2019.11.010.

Yang Y^#, Zhang L, Chen P, Liang T, Li X, Liu H*. (2019) UV-B photoreceptor UVR8 interacts with MYB73/MYB77 to regulate auxin responses and lateral root development. EMBO J. 2019 Nov 28:e101928. doi: 10.15252/embj.2019101928.

Zhan S^#*, Fang G^#, Cai M^#, Kou Z^#, Xu J, Cao Y, Bai L, Zhang Y, Jiang Y, Luo X, Xu J, Xu X, Zheng L, Yu Z, Yang H, Zhang Z, Wang S, Tomberlin JK*, Zhang J*, Huang Y*. (2019) Genomic landscape and genetic manipulation of the black soldier fly Hermetia illucens, a natural waste recycler. Cell Res. 2019 Nov 25. doi: 10.1038/s41422-019-0252-6.

Wang C^#, Sun B, Zhang X, Huang X, Zhang M, Guo H, Chen X, Huang F, Chen T, Mi H, Yu F, Liu LN, Zhang P*. (2019) Structural mechanism of the active bicarbonate transporter from cyanobacteria. Nat Plants. 2019 Nov;5(11):1184-1193.

Li J^#, Mutanda I, Wang K, Yang L, Wang J, Wang Y*. (2019) Chloroplastic metabolic engineering coupled with isoprenoid pool enhancement for committed taxanes biosynthesis in Nicotiana benthamiana. Nat Commun. 2019 Oct 24;10(1):4850.

Ye BB^#, Shang GD, Pan Y, Xu ZG, Zhou CM, Mao YB, Bao N, Sun L, Xu T, Wang JW*. (2019) AP2/ERF Transcription Factors Integrate Age and Wound Signals for Root Regeneration. Plant Cell. 2019 Oct 24. doi: 10.1105/tpc.19.00378.

Liu R^#, Lang Z*. (2019) The mechanism and function of active DNA demethylation in plants. J Integr Plant Biol. 2019 Oct 19. doi: 10.1111/jipb.12879.

Li JX^#, Yu F^#, Guo H, Xiong RX, Zhang WJ, He FY, Zhang MH, Peng Zhang*. (2019) Crystal structure of plant PLDα1 reveals catalytic and regulatory mechanisms of eukaryotic phospholipase D. Cell Research. 2019-10-16, 0:1–9; https://doi.org/10.1038/s41422-019-0244-6.

Xu JM^#, Hua K, Lang ZB*. (2019) Genome editing for horticultural crop improvement. Horticulture Research, 08 October 2019, 6 :1–16.

Liu ZF^#, Li JX^#, Sun YW^#, Zhang P*, Wang Y*. (2019) Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1. Plant Communications. 28 September 2019, https://doi.org/10.1016/j.xplc.2019.100004

Wang H^#, Wu Y^#, Zhang Y, Yang J, Fan W, Zhang H, Zhao S, Yuan L, Zhang P*. (2019) CRISPR/Cas9-Based Mutagenesis of Starch Biosynthetic Genes in Sweet Potato (Ipomoea Batatas) for the Improvement of Starch Quality. Int J Mol Sci. 2019 Sep 23;20(19).

许智宏*，张宪省*，苏英华*，胡玉欣*，徐麟*，王佳伟*，（2019），植物细胞全能性和再生。《中国科学：生命科学》，2019-10-08 http://engine.scichina.com/doi/10.1360/SSV-2019-0199

Peng FN^#, Zhang WX^#, Zeng WJ, Zhu JK*, Miki D*. (2019) Gene targeting in Arabidopsis via an all-in-one strategy that uses a translational enhancer to aid Cas9 expression. Plant Biotechnol J. 2019 Sep 25. doi: 10.1111/pbi.13265.

Cui CL^#, Wang Y^#, Liu JN, Zhao J, Sun PL, Wang SB*. (2019) A fungal pathogen deploys a small silencing RNA that attenuates mosquito immunity and facilitates infection. Nat Commun. 2019 Sep 20; 10(1):4298. doi.org/10.1038/s41467-019-12323-1.

Zheng XX^#, Li Q^#, Li CS, An D, Xiao Q, Wang WQ, Wu YR*. (2019) Intra-Kernel Reallocation of Proteins in Maize Depends on VP1-Mediated Scutellum Development and Nutrient Assimilation. Plant Cell. 2019 Sep 17; pii: tpc.00444.2019. doi: 10.1105/tpc.19.00444.

Tan YQ^#, Yang Y, Zhang A, Fei CF, Gu LL, Sun SJ, Xu W, Wang LL, Liu HT, Wang YF*. (2019) Three CNGC Family Members, CNGC5, CNGC6, and CNGC9, Are Required for Constitutive Growth of Arabidopsis Root Hairs as Ca2+-Permeable Channels. Plant Commun. 2019 Sep 17; DOI: http://doi.org/10.1016/j.xplc.2019.100001.

Ran XJ^#, Zhao F^#, Wang YJ^#, Liu J, Zhuang YL, Ye LH, Qi MF, Cheng JF, Zhang YJ*. (2019) Plant Regulomics: A Data-driven Interface for Retrieving Upstream Regulators from Plant Multi-omics Data. Plant J. 2019 Sep 8; doi: 10.1111/tpj.14526.

Huang JP^#, Fang C^#, Ma X^#, Wang L, Yang J, Luo J, Yan Y, Zhang Y*, Huang SX*. (2019) Tropane alkaloids biosynthesis involves an unusual type III polyketide synthase and non-enzymatic condensation. Nat Commun. 2019 Sep 6; 10(1):4036. doi: 10.1038/s41467-019-11987-z.

Zhang H^#, Zheng R, Wang Y, Zhang Y, Hong P, Fang Y, Li G*, Fang Y*. (2019) The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation. Nucleic Acids Res. doi: 10.1093/nar/gkz511.

Zhu Y^#, Song D^#, Zhang R, Luo L, Cao S, Huang C, Sun J, Gui J, Li L*. (2019) A xylem-produced peptide PtrCLE20 inhibits vascular cambium activity in Populus. Plant Biotechnol J. doi: 10.1111/pbi.13187.

Peng Y^#, Zhang Y^#, Gui Y, An D, Liu J, Xu X, Li Q, Wang J, Wang W, Shi C, Fan L, Lu B, Deng Y*, Teng S*, He Z*. (2019) Elimination of a Retrotransposon for Quenching Genome Instability in Modern Rice. Mol Plant. doi: 10.1016/j.molp.2019.06.004.

Liu CW^#, Breakspear A, Stacey N, Findlay K, Nakashima J, Ramakrishnan K, Liu M, Xie F, Endre G, de Carvalho-Niebel F, Oldroyd GED, Udvardi MK, Fournier J*, Murray JD*. (2019) A protein complex required for polar growth of rhizobial infection threads. Nat Commun. 10(1):2848. doi: 10.1038/s41467-019-10029-y.

Dogra V^#, Li M^#, Singh S^#, Li M, Kim C*. (2019) Oxidative post-translational modification of EXECUTER1 is required for singlet oxygen sensing in plastids. Nat Commun. 10(1):2834. doi: 10.1038/s41467-019-10760-6.

Li X^#, Lian H^#, Zhao Q, He Y*. (2019) microRNA166 monitors SPOROCYTELESS/NOZZLE (SPL/NZZ) for building of the anther internal boundary. Plant Physiol. 181:208–220. doi: 10.1104/pp.19.00336.

Chen CY^#, Liu YQ^#, Song WM, Chen DY, Chen FY, Chen XY, Chen ZW, Ge SX, Wang CZ, Zhan S, Chen XY, Mao YB*. (2019) An effector from cotton bollworm oral secretion impairs host plant defense signaling. Proc Natl Acad Sci U S A. 116(28):14331-14338. doi: 10.1073/pnas.1905471116.

Wang C^#, Tang S^#, Zhan Q, Hou Q, Zhao Y, Zhao Q, Feng Q, Zhou C, Lyu D, Cui L, Li Y, Miao J, Zhu C, Lu Y, Wang Y, Wang Z, Zhu J, Shangguan Y, Gong J, Yang S, Wang W, Zhang J, Xie H, Huang X*, Han B*. (2019) Dissecting a heterotic gene through GradedPool-Seq mapping informs a rice-improvement strategy. Nat Commun. 10(1):2982. doi: 10.1038/s41467-019-11017-y.

You L^#, Shi J, Shen L, Li L, Fang C, Yu C, Cheng W, Feng Y*, Zhang Y*. (2019) Structural basis for transcription antitermination at bacterial intrinsic terminator. Nat Commun. 10(1):3048. doi: 10.1038/s41467-019-10955-x.

Wang P^#, Yao S^#, Kosami KI, Guo T, Li J, Zhang Y, Fukao Y, Kaneko-Kawano T, Zhang H, She YM, Wang P, Xing W, Hanada K, Liu R*, Kawano Y*. (2019) Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening. Plant Biotechnol J. doi: 10.1111/pbi.13208.

Li Z^#, Wang M^#, Lin K^#, Xie Y^#, Guo J, Ye L, Zhuang Y, Teng W, Ran X, Tong Y, Xue Y, Zhang W*, Zhang Y*. (2019) The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements. Genome Biol. 20(1):139. doi: 10.1186/s13059-019-1746-8.

Nie WF^#, Lei M^#, Zhang M, Tang K, Huang H, Zhang C, Miki D, Liu P, Yang Y, Wang X, Zhang H, Lang Z, Liu N, Xu X, Yelagandula R, Zhang H, Wang Z, Chai X, Andreucci A, Yu JQ, Berger F, Lozano-Duran R, Zhu JK*. (2019) Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis. Proc Natl Acad Sci U S A. 116(33):16641-16650. doi: 10.1073/pnas.1906023116.

Ma F^#, Yang X, Shi Z*, Miao X*. (2019) Novel crosstalk between ethylene- and jasmonic acid-pathway responses to a piercing-sucking insect in rice. New Phytol. doi: 10.1111/nph.16111.

Dong J^#, Ma G^#, Sui L^#, Wei M, Satheesh V, Zhang R, Ge S, Li J, Zhang T.-E., Wittwer C, Jessen HJ, Zhang H, An G.-Y., Chao D.-Y., Liu D., and Lei M*. (2019). Inositol Pyrophosphate InsP8 Acts as an Intracellular Phosphate Signal in Arabidopsis. Mol. Plant. doi: https://doi.org/10.1016/j.molp.2019.08.002.

Zhang L, Cenci A, Rouard M, Zhang D, Wang YY*, Tang WH*, Zheng SJ* (2019). Transcriptomic analysis of resistant and susceptible banana corms in response to infection byFusarium oxysporum f. sp. cubense tropical race 4. Scientific Reports 9(1): 8199. doi.org/10.1038/s41598-019-44637-x

Fang C^#, Li L^#, Shen L, Shi J, Wang S*, Feng Y*, Zhang Y*. (2019) Structures and mechanism of transcription initiation by bacterial ECF factors. Nucleic Acids Res. pii: gkz470. doi: 10.1093/nar/gkz470.

Gui J^#*, Luo L, Zhong Y, Sun J, Umezawa T, Li L*. (2019) Phosphorylation of LTF1, A MYB Transcription Factor in Populus, Acts as a Sensory Switch Regulating Lignin Biosynthesis in Wood Cells. Mol Plant. pii: S1674-2052(19)30173-X. doi: 10.1016/j.molp.2019.05.008.

Chen K^#, Guo T^#, Li XM^#, Zhang YM, Yang YB, Ye WW, Dong NQ, Shi CL, Kan Y, Xiang YH, Zhang H, Li YC, Gao JP, Huang X, Zhao Q, Han B, Shan JX*, Lin HX*. (2019) Translational Regulation of Plant Response to High Temperature by a Dual Function tRNAHis Guanylyltransferase in Rice. Mol Plant. pii: S1674-2052(19)30162-5. doi: 10.1016/j.molp.2019.04.012.

Wang F^#, Gao Y^#, Liu Y^#, Zhang X, Gu X, Ma D, Zhao Z, Yuan Z, Xue H, Liu H*. (2019) BES1 regulated BEE1 controls photoperiodic flowering downstream of blue light signaling pathway in Arabidopsis. New Phytol. doi: 10.1111/nph.15866.

Xu Q, Li R, Weng L, Sun Y, Li M, Xiao H*. (2019) Domain-specific expression of meristematic genes is defined by the LITTLE ZIPPER protein DTM in tomato. Commun Biol. 2:134. doi: 10.1038/s42003-019-0368-8. eCollection 2019.

Zhang G^#, Zhao F^#, Chen L^#, Pan Y, Sun L, Bao N, Zhang T, Cui CX, Qiu Z, Zhang Y, Yang L, Xu L*. (2019) Jasmonate-mediated wound signalling promotes plant regeneration. Nat Plants. (5):491-497. doi: 10.1038/s41477-019-0408-x. Epub 2019 Apr 22.

Zhang TQ^#, Xu ZG^#, Shang GD, Wang JW*. (2019) A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root. Mol Plant. 12(5):648-660. doi: 10.1016/j.molp.2019.04.004. Epub 2019 Apr 17.

Zhao Q^#, Yang J^#, Cui MY, Liu J, Fang Y, Yan M, Qiu W, Shang H, Xu Z, Yidiresi R, Weng JK, Pluskal T, Vigouroux M, Steuernagel B, Wei Y, Yang L, Hu Y, Chen XY, Martin C*. (2019) The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis. Mol Plant. pii: S1674-2052(19)30131-5. doi: 10.1016/j.molp.2019.04.002.

Huang Y^#, Wang H^#, Huang X, Wang Q, Wang J, An D, Li J, Wang W, Wu Y*. (2019) Maize VKS1 Regulates Mitosis and Cytokinesis during Early Endosperm Development. Plant Cell. pii: tpc.00966.2018. doi: 10.1105/tpc.18.00966.

Tao Z^#, Hu H^#, Luo X^#, Jia B, Du J*, He Y*. (2019) Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat Plants. (4):424-435. doi: 10.1038/s41477-019-0402-3. Epub 2019 Apr 8.

Zhai K^#, Deng Y^#, Liang D, Tang J, Liu J, Yan B, Yin X, Lin H, Chen F, Yang D, Xie Z, Liu JY, Li Q, Zhang L, He Z*. (2019) RRM Transcription Factors Interact with NLRs and Regulate Broad-Spectrum Blast Resistance in Rice. Mol Cell. pii: S1097-2765(19)30187-X. doi: 10.1016/j.molcel.2019.03.013.

Cao M^#, Chen R^#, Li P^#, Yu Y, Zheng R, Ge D, Zheng W, Wang X, Gu Y, Gelová Z, Friml J, Zhang H, Liu R, He J, Xu T*. (2019) TMK1-mediated auxin signalling regulates differential growth of the apical hook. Nature. 568(7751):240-243. doi: 10.1038/s41586-019-1069-7. Epub 2019 Apr 3.

Zheng S^#, Hu H^#, Ren H, Yang Z, Qiu Q, Qi W, Liu X, Chen X, Cui X, Li S, Zhou B, Sun D*, Cao X*, Du J*. (2019) The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor. Nat Commun. 10(1):1303. doi: 10.1038/s41467-019-09310-x.

Li L^#, Fang C^#, Zhuang N, Wang T, Zhang Y*. (2019) Structural basis for transcription initiation by bacterial ECF σ factors. Nat Commun. 10(1):1153. doi: 10.1038/s41467-019-09096-y.

Wang L^#, Zhou CM^#, Mai YX, Li LZ, Gao J, Shang GD, Lian H, Han L, Zhang TQ, Tang HB, Ren H, Wang FX, Wu LY, Liu XL, Wang CS, Chen EW, Zhang XN, Liu C, Wang JW*. (2019) A spatiotemporally regulated transcriptional complex underlies heteroblastic development of leaf hairs in Arabidopsis thaliana. EMBO J. 38(8). pii: e100063. doi: 10.15252/embj.2018100063. Epub 2019 Mar 6.

Jia LJ^#, Tang HY^#, Wang WQ^#, Yuan TL, Wei WQ, Pang B, Gong XM, Wang SF, Li YJ, Zhang D, Liu W*, Tang WH*. (2019) A linear nonribosomal octapeptide from Fusarium graminearum facilitates cell-to-cell invasion of wheat. Nat Commun. 10(1):922. doi: 10.1038/s41467-019-08726-9.

Zhang ZJ^#, Zhang SS^#, Niu BL^#, Ji DF, Liu XJ, Li MW, Bai H, Palli SR, Wang CZ, Tan AJ*. (2019) A determining factor for insect feeding preference in the silkworm, Bombyx mori. PLoS Biol. 17(2):e3000162. doi: 10.1371/journal.pbio.3000162. eCollection 2019 Feb.

Liu J^#, Feng L^#, Gu X^#, Deng X^#, Qiu Q, Li Q, Zhang Y, Wang M, Deng Y, Wang E, He Y, B？urle I, Li J, Cao X*, He Z*. (2019) An H3K27me3 demethylase-HSFA2 regulatory loop orchestrates transgenerational thermomemory in Arabidopsis. Cell Res. 29(5):379-390. doi: 10.1038/s41422-019-0145-8. Epub 2019 Feb 18.

Liu CW^#, Breakspear A^#, Guan D, Cerri MR, Jackson K, Jiang S, Robson F, Radhakrishnan GV, Roy S, Bone C, Stacey N, Rogers C, Trick M, Niebel A, Oldroyd GED, de Carvalho-Niebel F, Murray JD*. (2019) NIN Acts as a Network Hub Controlling a Growth Module Required for Rhizobial Infection. Plant Physiol. 179(4):1704-1722. doi: 10.1104/pp.18.01572. Epub 2019 Feb 1.

Dai Z^#, Tan J^#, Zhou C, Yang X, Yang F, Zhang S, Sun S, Miao X*, Shi Z*. (2019) The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa). Plant Biotechnol J. doi: 10.1111/pbi.13091.

Ping Y, Li X, Xu B, Wei W, Wei W, Kai G, Zhou Z*, Xiao Y*. (2019) Building Microbial Hosts for Heterologous Production of N-Methylpyrrolinium. ACS Synth Biol. 8(2):257-263. doi: 10.1021/acssynbio.8b00483. Epub 2019 Jan 31.

Zou C, Li L, Miki D, Li D, Tang Q, Xiao L, Rajput S, Deng P, Peng L, Jia W, Huang R, Zhang M, Sun Y, Hu J, Fu X, Schnable PS, Chang Y, Li F, Zhang H, Feng B, Zhu X, Liu R, Schnable JC, Zhu JK*, Zhang H*. (2019) The genome of broomcorn millet. Nat Commun. 10(1):436. doi: 10.1038/s41467-019-08409-5.

Liu C^#, Yu H^#, Li L*. (2019) SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet. 15(1):e1007928. doi: 10.1371/journal.pgen.1007928. eCollection 2019 Jan.

Huang H^#, Liu R^#, Niu Q, Tang K, Zhang B, Zhang H, Chen K, Zhu JK*, Lang Z*. (2019) Global increase in DNA methylation during orange fruit development and ripening. Proc Natl Acad Sci U S A. 116(4):1430-1436. doi: 10.1073/pnas.1815441116. Epub 2019 Jan 11.

Lv R^#, Li Z^#, Li M, Dogra V, Lv S, Liu R, Lee KP*, Kim C*. (2019) Uncoupled Expression of Nuclear and Plastid Photosynthesis-Associated Genes Contributes to Cell Death in a Lesion Mimic Mutant. Plant Cell. 31(1):210-230. doi: 10.1105/tpc.18.00813. Epub 2019 Jan 3.

Wang P, Wei W, Ye W, Li X, Zhao W, Yang C, Li C Yan X*, Zhou Z*. (2019) Cell Synthesizing ginsenoside Rh2 in Saccharomyces cerevisiae cell factory at high-efficiency. Cell Discov. 5:5. doi: 10.1038/s41421-018-0075-5. eCollection 2019.

Huang H, Chai C, Yang S, Jiang W*, Gu Y*. (2019) Phage serine integrase-mediated genome engineering for efficient expression of chemical biosynthetic pathway in gas-fermenting Clostridium ljungdahlii. Metab Eng. 52:293-302. doi: 10.1016/j.ymben.2019.01.005. Epub 2019 Jan 8.

Sun N, Han XL, Xun M, Kaplan A, Espie, GS, Mi HL* (2018) A thylakoid-located carbonic anhydrase regulates CO₂ uptake in the cyanobacterium Synechocystis sp. PCC 6803. New Phytologist. 222(1)：206-217. DOI: 10.1111/nph.15575.

Huang CW, Chen WJ, Ke X, Li YH*, Luan YX*. (2019) A multi-generational risk assessment of Cry1F on the non-target soil organism Folsomia candida (Collembola) based on whole transcriptome profiling. Peer J. doi: 10.7717/peerj.6924.

Liang Y, Xie W, Luan YX*. (2019) Developmental expression and evolution of hexamerin and haemocyanin from Folsomia candida (Collembola). Insect Molecular Biology. doi: 10.1111/imb.12585.