Qin H?, Ou L?, Gao J, Chen L, Wang JW*, Hao P*, Li X*. DENA: training an authentic neural network model using Nanopore sequencing data of Arabidopsis transcripts for detection and quantification of N6-methyladenosine on RNA. Genome Biol. 2022; 23(1):25.

Chen P, Chen M, Chen Y, Jing X, Zhang N, Zhou X, Li X*, Long G*, Hao P*. Targeted inhibition of Zika virus infection in human cells by CRISPR-Cas13b. Virus Res. 2022. doi: 10.1016/j.virusres.2022.198707.

Chen P, Zhou H, Huang Y, Xie Z, Zhang M, Wei Y, Li J, Ma Y, Luo M, Ding W, Cao J, Jiang T, Nan P*, Fang J*, Li X*. Revealing the full biosphere structure and versatile metabolic functions in the deepest ocean sediment of the Challenger Deep. Genome Biol. 2021; 22(1):207.

Zhou H, Chen P, Zhang M, Chen J*, Fang J*, Li X*. Revealing the Viral Community in the Hadal Sediment of the New Britain Trench. Genes (Basel). 2021; 12(7):990.

Tang G, Xie B, Hong X, Qin H, Wang J, Huang H, Hao P*, Li X*. Creating RNA Specific C-to-U Editase from APOBEC3A by Separation of Its Activities on DNA and RNA Substrates. ACS Synth Biol. 2021;10(5): 1106-1115.

Li X, Zhou H, Xiao N, Wu X, Shan Y, Chen L, Wang C, Wang Z, Huang J*, Li A*, Li X*. Expanding the Coverage of the Metabolic Landscape in Cultivated Rice with Integrated Computational Approaches. Genomics Proteomics Bioinformatics 2021; S1672-0229(21)00030-9.

Wu X, Li X, Wang W, Shan Y, Wang C, Zhu M, La Q, Zhong Y, Xu Y*, Nan P*, Li X*. Integrated metabolomics and transcriptomics study of traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao reveals global metabolic profile and novel phytochemical ingredients. BMC Genomics 2020; 21(Suppl 10):697.

Zhang N, Jing X, Liu Y, Chen M, Zhu X, Jiang J, Wang H, Li X*, Hao P*. Interfering with retrotransposition by two types of CRISPR effectors: Cas12a and Cas13a. Cell Discovery 2020; 6:30.

Jing X#, Xie B#, Chen L, Zhang N, Jiang Y, Qin H, Wang H, Hao P*, Yang S*, Li X*. Implementation of the CRISPR-Cas13a system in fission yeast and its repurposing for precise RNA editing. Nucleic Acids Res. 2018; 46(15):e90.

Chen P, Jing X, Ren J, Cao H, Hao P*, Li X*. Modeling BioNano optical data and simulation study of genome map assembly. Bioinformatics 2018; 34(23):3966-3974.

Shen F#, Wu X#, Shi L, Zhang H, Chen Y, Qi X, Wang Z*, and Li X*. Transcriptomic and metabolic flux analyses reveal shift of metabolic patterns during rice grain development. BMC Systems Biology 2018; 12(Suppl 4):47.

Cao Y, Cao R, Huang Y, Zhou H, Liu Y, Li X*, Zhong W*, Hao P*. A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza A viruses. BMC Genomics 2018; 19(Suppl 1):925.

Chen P#, Jing X#, Liao B, Zhu Y, Xu J, Liu R, Zhao Y, and Li X*. BioNano map resource for Oryza sativa ssp. japonica and indica and its application in rice genome sequence correction and gap filling. Molecular Plant 2017; 10, 895–898.

Zhu Y#, Chen L#, Zhang C, Hao P, Jing X* and Li X*. Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in nonseed vascular plant Selaginella moellendorffii. BMC Genomics 2017; 18(Suppl 1):1042.

Lv C#, Wu X#, Wang X, Su J, Zeng H, Zhao J, Lin S, Liu R, Li H*, Li X*, Zhang W*. The gene expression profiles in response to 102 traditional Chinese medicine (TCM) components: a general template for research on TCMs. Scientific Reports 2017; 7:352.

Yu Y, Zhou H, Kong Y, Pan B, Chen L,Wang H, Hao P* and Li X*. The landscape of A-to-I RNA editome is shaped by both positive and purifying selection. PLoS Genetics 2016; 12(7): e1006191.

Kong Y, Zhou H, Yu Y, Chen L, Hao P*, Li X*. The evolutionary landscape of intergenic trans-splicing events in insects. Nature Communications 2015; 6:8734.

Pan B, Sheng J, Sun W, Zhao Y, Hao P*, Li X*. OrysPSSP: a comparative platform for small secreted proteins from rice and other plants. Nucleic Acids Res. 2013; 41(D1):D1192-8.